rs31706612 SNP Detail

Summary

• ID
  rs31706612
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:83250891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACCAGCC TGGTCTATAC
  AGTGAGATCC GGGACAGTTA GGGTTACACA GACAAAATGT CTCAAATAAA TAAATAAATA
  AATAAATAAA TAAATAAATA AGGGGAAGCT CCATGGAAAC AGCATGGTGG CACACACCAA
  AAATCCCAGC ACTTGAGAGG CTGAGGCCGG AAGATTGGTA GTTTAAGGCC AGCGGGTCAC
  W
  TCTAAATAAT CATGATTCGA GGACCCTCGG AGAGTCCTGT GGAGAAAAGT GACAAGGGTG
  CGGCACTAGC TCAACAGCTA GAGGGGGACG CGACCAGGCG TGCCAGTTAA GTGAGGTGCT
  GTTAACTTTT CCTGGGGAGA CGCCACCAAA CCCCAAAAAA CCCCTGGGGG ACACGAACCA
  CAGCCCAAAG CGCGATTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48079953	NES12084207	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31706612					SNP	T	T	A	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48079953	NES12084207	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:83250891 () rs orientation: forward

Symbol	Name	Function Class
1700001L05Rik	RIKEN cDNA 1700001L05 gene	within coordinates
Cpgi7443	CpG island 7443	69 bp proximal
Rr304712	regulatory region 304712	691 bp distal
Rr308167	regulatory region 308167	1691 bp distal
Rr312191	regulatory region 312191	within coordinates
Tssr135657	transcription start site region 135657	281 bp downstream
Tssr135658	transcription start site region 135658	316 bp downstream
Tssr135659	transcription start site region 135659	549 bp downstream
Tssr135660	transcription start site region 135660	577 bp downstream
Tssr135661	transcription start site region 135661	607 bp downstream