rs31707055 SNP Detail

Summary

• ID
  rs31707055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90623038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGCCCT GAAATGTTTC
  TTTTTGAATT GAGTTATTTT ACACATGAAT GGACAGTTAC CATTATATAT CTGAATCATT
  TCACATTCCC TCCCATGGCC TAACAACAGT TTATCTTCTT ATTTTGGGCA CAACAGATGT
  CAGAGAGCCT GCTTTAGGAA TTCTAAGTAG AACTGTAATT AAGCAATGCA AGGCACGTAC
  R
  TTTACTATGT CATTGCCTAT GGCTATGAAG TGCAAATCCT AACAGTCCTG CTAATACTTT
  TCTAACATCC ATCATTTCTT TGTTTTCAGG GTCCAAACCT TGTCACTAGA TGCAAAGACG
  CCTTAGCCTA AACACATCAC AACCACAACC TTCTCAGGTA ACTATACTTG GGACTTAAAA
  AACATAATCA TAATCATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596182	NES10456618	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31707055					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596182	NES10456618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90623038 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123615	regulatory region 123615	296 bp distal
Rr123616	regulatory region 123616	1 bp proximal
Tssr47120	transcription start site region 47120	497 bp downstream
Tssr47121	transcription start site region 47121	85 bp upstream
Tssr47122	transcription start site region 47122	1287 bp upstream
Tssr51773	transcription start site region 51773	534 bp upstream
Tssr51774	transcription start site region 51774	474 bp upstream
Tssr51775	transcription start site region 51775	120 bp downstream
Tssr51776	transcription start site region 51776	1307 bp downstream
Tssr51777	transcription start site region 51777	1335 bp downstream
Tssr51778	transcription start site region 51778	1348 bp downstream
Tssr51779	transcription start site region 51779	1407 bp downstream