rs31707059 SNP Detail

Summary

• ID
  rs31707059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90623518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGTCATC AGTTTGGGTT
  CCATTTGTAG ATAAGAAACT GAACATATAA AGGTCTAGGT TAATGCAATT TACACAAAAG
  GAGACCAAAC CAGGGAGAGA AGGAACCAAA ATTAAAAATT CAAACCAGAG CAAAGGAGTT
  AGCCCTGGTT TTGCTCTGAC TTACATGAAC CACTATGTGG AGTCCTCCAT GTTAGCCTAG
  Y
  CAAGCTTATC CTCTGGATGA AGTTGAAACC ATATGAAGGA ATATTTGGGG GGTGGGTCAA
  AACAGTTGTG TATCAATGAT TCCATGTGGT TTGACCCAAT CATTCTGTGA ATCCATTTCA
  ACAGAAGATA CAACGGGTTC TGTTTCATAA TAAGTGATCC ACTTCCAAAT TTCTGATGTG
  CCCCATGCTA AGCTTTAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596186	NES10456626	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31707059					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596186	NES10456626	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90623518 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123615	regulatory region 123615	776 bp distal
Rr123616	regulatory region 123616	within coordinates
Tssr47120	transcription start site region 47120	977 bp downstream
Tssr47121	transcription start site region 47121	347 bp downstream
Tssr47122	transcription start site region 47122	807 bp upstream
Tssr51773	transcription start site region 51773	1014 bp upstream
Tssr51774	transcription start site region 51774	954 bp upstream
Tssr51775	transcription start site region 51775	323 bp upstream
Tssr51776	transcription start site region 51776	827 bp downstream
Tssr51777	transcription start site region 51777	855 bp downstream
Tssr51778	transcription start site region 51778	868 bp downstream
Tssr51779	transcription start site region 51779	927 bp downstream