rs31707853 SNP Detail

Summary

• ID
  rs31707853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90647623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGATAA TTTTTTTTTA
  AATGATCCTC TTCCAGAACC ATTATTAAGC TAAGTCAAAA GTTAACTGAA GCAAATTTTA
  CTGAGATTCA GAAGCTGGCC CTGGATGTGG CTCACATCCA CGAGGAGTGT TGCCAAGGAA
  ACTCGCTGGA GTGTCTGCAG GATGGGGTAG GAGTCTCCCT CTCTCCCTTT TTGTCTCAAT
  Y
  AATGTTTCAC TATGCCTGGC TTGGCTGGGG TGCAGTGAAC TTACAGACTT TCGAAGAGTA
  AAATTTGAGC TACGTCATGA TTGCTTTGGG GTCTCACCTC AGGCATTAGC AATATCTGAT
  CCCTTTCATG AGACTACGAG ACATTCAGTT CTTATTTGAC TGAGAGACTG AGTCTCTCCC
  ACTAGCTAGC TAGCTGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596301	NES10455765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31707853					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596301	NES10455765	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90647623 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47135	transcription start site region 47135	1449 bp downstream
Tssr47136	transcription start site region 47136	123 bp downstream
Tssr47137	transcription start site region 47137	61 bp downstream
Tssr47138	transcription start site region 47138	636 bp upstream
Tssr47139	transcription start site region 47139	1637 bp upstream
Tssr47140	transcription start site region 47140	1666 bp upstream
Tssr47141	transcription start site region 47141	1680 bp upstream
Tssr47142	transcription start site region 47142	1768 bp upstream
Tssr51782	transcription start site region 51782	1452 bp upstream
Tssr51783	transcription start site region 51783	1397 bp upstream
Tssr51784	transcription start site region 51784	1755 bp downstream