rs31708315 SNP Detail

Summary

• ID
  rs31708315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90647787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAGGAGT CTCCCTCTCT
  CCCTTTTTGT CTCAATTAAT GTTTCACTAT GCCTGGCTTG GCTGGGGTGC AGTGAACTTA
  CAGACTTTCG AAGAGTAAAA TTTGAGCTAC GTCATGATTG CTTTGGGGTC TCACCTCAGG
  CATTAGCAAT ATCTGATCCC TTTCATGAGA CTACGAGACA TTCAGTTCTT ATTTGACTGA
  R
  AGACTGAGTC TCTCCCACTA GCTAGCTAGC TGCTGGTTTA CAGTGAGGGC CACTTGCCGG
  GAAAACTTAT AAACTGACAT CAAAGAATGT ATAGTTTAAC TGGAGAGATA AAACAATTGG
  CCTTCTTGAA GTTATAGACT GTCTTTTGTT TACCATTGTC TCTACAGGGC AATGTGTGGC
  ACATTGAAGG GTTCTGTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss46596303	NES10455767	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs31708315					SNP	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596303	NES10455767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90647787 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47135	transcription start site region 47135	1613 bp downstream
Tssr47136	transcription start site region 47136	287 bp downstream
Tssr47137	transcription start site region 47137	225 bp downstream
Tssr47138	transcription start site region 47138	472 bp upstream
Tssr47139	transcription start site region 47139	1473 bp upstream
Tssr47140	transcription start site region 47140	1502 bp upstream
Tssr47141	transcription start site region 47141	1516 bp upstream
Tssr47142	transcription start site region 47142	1604 bp upstream
Tssr51782	transcription start site region 51782	1616 bp upstream
Tssr51783	transcription start site region 51783	1561 bp upstream
Tssr51784	transcription start site region 51784	1591 bp downstream