rs31708320 SNP Detail

Summary

• ID
  rs31708320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90648340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGTGGCT AATTTGGGTT
  AACTCTGAGC TTTCTAGATA TTGAATGAGA GGCCTGTATA TACCAAATTA CTCCTCCTTT
  CATCCCTGTG ACACCAAGGA CTACCTTTTT TTTTTTTTTT TAAATCTCTC TTGTTAAAGG
  CTCAAATGAT GTTGGAAAAA GGGACAGAAA AGACTCACTT CAATATACTC AGTGTCATTC
  R
  TTCTTTGTAG AGGTAGTCAG GGAAGTCAGC AGGTGACAGG GCTCCCAGGG GGCAGACTGG
  ATCCTCCAGG ACAGATGGCA CCCCTGCTGT GAGGAGTGGT GAATCCTGAA GCACGGACTT
  GATTACTTTT TCCCTCATGC ACATTAGGAA TTCATCAGCC CCTTAGGAGT ACTGGCAAAA
  AACGATTTTG TTTTTCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596309	NES10455774	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31708320					SNP	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596309	NES10455774	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90648340 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47136	transcription start site region 47136	840 bp downstream
Tssr47137	transcription start site region 47137	778 bp downstream
Tssr47138	transcription start site region 47138	77 bp downstream
Tssr47139	transcription start site region 47139	920 bp upstream
Tssr47140	transcription start site region 47140	949 bp upstream
Tssr47141	transcription start site region 47141	963 bp upstream
Tssr47142	transcription start site region 47142	1051 bp upstream
Tssr51784	transcription start site region 51784	1038 bp downstream