rs31708322 SNP Detail

Summary

• ID
  rs31708322
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90648418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCCCTG TGACACCAAG
  GACTACCTTT TTTTTTTTTT TTTAAATCTC TCTTGTTAAA GGCTCAAATG ATGTTGGAAA
  AAGGGACAGA AAAGACTCAC TTCAATATAC TCAGTGTCAT TCGTTCTTTG TAGAGGTAGT
  CAGGGAAGTC AGCAGGTGAC AGGGCTCCCA GGGGGCAGAC TGGATCCTCC AGGACAGATG
  R
  CACCCCTGCT GTGAGGAGTG GTGAATCCTG AAGCACGGAC TTGATTACTT TTTCCCTCAT
  GCACATTAGG AATTCATCAG CCCCTTAGGA GTACTGGCAA AAAACGATTT TGTTTTTCTT
  TGAGGTCAGT TTTCTTGGTT TGTAATTGAC AATTTTATTG ATTTTATTTT TCTAGTTAAA
  AAAATAGCTT TTAACTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596311	NES10455776	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31708322					SNP	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596311	NES10455776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90648418 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47136	transcription start site region 47136	918 bp downstream
Tssr47137	transcription start site region 47137	856 bp downstream
Tssr47138	transcription start site region 47138	155 bp downstream
Tssr47139	transcription start site region 47139	842 bp upstream
Tssr47140	transcription start site region 47140	871 bp upstream
Tssr47141	transcription start site region 47141	885 bp upstream
Tssr47142	transcription start site region 47142	973 bp upstream
Tssr51784	transcription start site region 51784	960 bp downstream