rs31708656 SNP Detail

Summary

• ID
  rs31708656
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90648923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA ACAGTAAAAA GCTGCTGTCT
  K
  GTTTAAACAA CACATTTCCT TCTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45818421	mCV23646196	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				T		G
ss46596315	NES10455780	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	G	G		G	G	G		T	G		T
ss148814469	ENSMUSSNP5283176	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						G
ss321607433	CHEV_5_90930090	CHEVERUD	SCREENING_POP	f	SNP											G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31708656					SNP	T	T	T	T	G	G	T	G	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596315	NES10455780	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90648923 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47136	transcription start site region 47136	1423 bp downstream
Tssr47137	transcription start site region 47137	1361 bp downstream
Tssr47138	transcription start site region 47138	660 bp downstream
Tssr47139	transcription start site region 47139	337 bp upstream
Tssr47140	transcription start site region 47140	366 bp upstream
Tssr47141	transcription start site region 47141	380 bp upstream
Tssr47142	transcription start site region 47142	468 bp upstream
Tssr51784	transcription start site region 51784	455 bp downstream