rs31709027 SNP Detail

Summary

• ID
  rs31709027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128064658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTGAAGG AGAGAAAAGG
  TCTGGTGGCC AACAGAGAGC TTTGGGGTAG CTTATAGATC TGCTTAGCTG CATACTGAAA
  CCCTACCTGA ATTTACAGGT ACAGTGGGAG ATTGGAGGCT GCTTCTCCAT GAGCCTAGGA
  AGGAGAGAGT AAGTCTGAAC GAGAAACGGA TTATATCCCA AAGTGAAAAA GGAAAGAGCA
  R
  CTGGGCGTGG TGGCGCACGC CTTTGATCCC AGCACTTGGG AGGCAGAGGC AGGCGAATTT
  CTGAGTTCGA GGCCAGCGTG GTCTACAGAA TGAGTTCCAG GACAGCCAAG GCTATACACA
  GCAAATCCTA TCTCGAAAAA GCCAAAAAAA AAAAAAATTA ATTTTTTTTT TAAAAAAGGA
  AAGGAAAGAA CTTCAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46060589	mCV24293528	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss145891498	ENSMUSSNP2797172	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31709027					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128064658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	696 bp distal
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	997 bp downstream
Rr656041	regulatory region 656041	1948 bp distal
Rr656042	regulatory region 656042	845 bp distal
Rr656043	regulatory region 656043	73 bp distal
Rr656044	regulatory region 656044	587 bp distal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1	1217 bp upstream
Tssr2414	transcription start site region 2414	1739 bp upstream
Tssr69425	transcription start site region 69425	960 bp downstream
Tssr75110	transcription start site region 75110	1757 bp upstream
Tssr75111	transcription start site region 75111	1608 bp upstream
Tssr75112	transcription start site region 75112	1547 bp upstream
Tssr75113	transcription start site region 75113	1534 bp upstream
Tssr75114	transcription start site region 75114	1374 bp upstream
Tssr75115	transcription start site region 75115	1312 bp upstream
Tssr75116	transcription start site region 75116	1272 bp upstream