rs31709337 SNP Detail

Summary

• ID
  rs31709337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:65069994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGTGG TGATGTGTAA
  GCACTTTTGA CCCGGTGACA ATGGGAGGAT TTGGCTAAGG TAGAGGGCAG AGAAGCTGTC
  TTGGTGGTCT GTGAGCCCAC AAGGCCTTGG AAGGCAAGAA ATTTTGCTTC AGCCTCCTAG
  GCACATTGGA TTCCCAATGA GATACTGCTA ACTGGAGATG GATGGATGAA GACATGGACT
  R
  TGGTAGGAAA GGCTTCCTTG GAGGTTAGGT CTCAGGTTAG AAGATGATGA CTGTGGGGTG
  GGGGAGGCCA TGTGTGGCAT AATGTTGGTG TGAGGTTCAA GGTTCAGGAG CCTTTCTTGA
  GCACTGAGCA ATGATGGTGA AACCAGATGA GAAAAGCTGG AAGAAGACTC CATGGGAAGA
  CCAGCAGGCT CAACTAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49766933	NES12378549	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31709337					SNP	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49766933	NES12378549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65069994 () rs orientation: forward

Symbol	Name	Function Class
Gm62074	predicted gene, 62074	1901 bp downstream
H2al1r-ps	H2A histone family member L1R, pseudogene	498 bp downstream
Tssr161126	transcription start site region 161126	892 bp downstream