rs31709339 SNP Detail

Summary

• ID
  rs31709339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:65068919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTTAATAA ATAAGATAGA AGACTGATCA AAGGTGAGTC
  TAGATATCAA CTCCAGGCCT TTATGTGTGT GGCCACACAG GAGCACATGC AAACATTCAC
  Y
  CACACACAAG AAAATGAGAA AAGATATAAA GGACATATTC AGTAAGGTGA TCTGTTTCCT
  AATAAGGACA TTTCTGCCTG AACACCAGAG TTCAGTGGCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss49766935	NES12378547	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs31709339					SNP	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49766935	NES12378547	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65068919 () rs orientation: forward

Symbol	Name	Function Class
Gm14671	predicted gene 14671	1008 bp downstream
Gm62074	predicted gene, 62074	826 bp downstream
H2al1r-ps	H2A histone family member L1R, pseudogene	236 bp upstream
Tssr161126	transcription start site region 161126	172 bp upstream