rs31709342 SNP Detail

Summary

• ID
  rs31709342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:65067185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCCCAGG CTAATCTGTA
  GCTCATCTGC AGCTTATGAT ATAGCCCACA CTGGCTTTGG ACTGTTGACA ATCTCTCTGC
  CCCAGCCTCT AGACTCCAGC CACTAGAGAG TGCTGAGCCT GCAATGTGTC TTAGTGTGTA
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG CATGCATATA TTAAACTAGG
  R
  TGATTTGTGG CATTTGTTTT ATGTAGAATT GTGGAACATA TACGCACAAA CAGCATTACA
  CCCTGTTAGT CCTCTTTCAC AGCAGGATGA CAAGGTATTT TTTCTATTTT GTGATTGAGG
  GAAAAGTTCA GGTAAGTGCT TTACCTACAG TTGGCACAGA TAATGTTTCA AGAAGAAAAC
  TAAGCATCTT TGAGGGTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49766938	NES12378558	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31709342					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49766938	NES12378558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65067185 () rs orientation: forward

Symbol	Name	Function Class
Gm14671	predicted gene 14671	465 bp upstream
Gm62074	predicted gene, 62074	within coordinates
H2al1r-ps	H2A histone family member L1R, pseudogene	1970 bp upstream
Tssr161126	transcription start site region 161126	1906 bp upstream