rs31709548 SNP Detail

Summary

• ID
  rs31709548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171123390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATT CCAAGATGGT GGTGTCACAC
  R
  TCTTTAATCT CAGCCCTCAG GAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45061442	mCV22659517	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss146159469	ENSMUSSNP5352257	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss320117868	CHEV_1_173225948	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31709548					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171123390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	935 bp distal
Rr28967	regulatory region 28967	190 bp distal
Rr31956	regulatory region 31956	211 bp proximal
Rr372447	regulatory region 372447	within coordinates
Tssr15031	transcription start site region 15031	1030 bp upstream
Tssr15032	transcription start site region 15032	978 bp upstream
Tssr15033	transcription start site region 15033	806 bp upstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	815 bp upstream