rs31710058 SNP Detail

Summary

• ID
  rs31710058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188740108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGCCTCCAT GGCGGCCGCC ACAACCATCT GGAGGACGGG
  TCGCCGCGAG GGACAAAAAG CTGTAGCGCC GGCGCTTCAC GCTTACGAAG AAGGAGTGGG
  Y
  GGGGCTGGTG AGAGGGAGGA GCTCCTGGCG ATGGGCGGGG CTGGACGAAG GGTCTTCTGC
  CACCGATGGC CTAGGAAAGA TTTGCCCCTT GCCTCTTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45061489	mCV23589539	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146483324	ENSMUSSNP2802320	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31710058					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188740108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1193	CpG island 1193	within coordinates
Kctd3	potassium channel tetramerisation domain containing 3	70 bp upstream
Rr372619	regulatory region 372619	within coordinates
Rr425737	regulatory region 425737	1329 bp distal
Rr425738	regulatory region 425738	82 bp distal
Rr425739	regulatory region 425739	within coordinates
Tssr15707	transcription start site region 15707	59 bp upstream
Tssr15708	transcription start site region 15708	42 bp upstream
Tssr15709	transcription start site region 15709	1 bp upstream