rs31710263 SNP Detail

Summary

• ID
  rs31710263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135301475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG CCTGTTTGAG GGCCTACCCT
  Y
  AGCCCTGGGC TGGATGGGGG AAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45061533	mCV23630702	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss319989529	CHEV_1_137270314	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31710263					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135301475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	699 bp proximal
Rr12587	regulatory region 12587	1726 bp proximal
Rr28595	regulatory region 28595	74 bp distal
Rr28596	regulatory region 28596	125 bp proximal
Shisa4	shisa family member 4	within coordinates
Tssr13840	transcription start site region 13840	1849 bp upstream
Tssr13841	transcription start site region 13841	1405 bp upstream
Tssr13842	transcription start site region 13842	527 bp upstream
Tssr13843	transcription start site region 13843	316 bp upstream
Tssr13844	transcription start site region 13844	282 bp upstream
Tssr13845	transcription start site region 13845	254 bp upstream
Tssr13846	transcription start site region 13846	221 bp downstream
Tssr13847	transcription start site region 13847	682 bp downstream
Tssr13848	transcription start site region 13848	1182 bp downstream
Tssr13849	transcription start site region 13849	1199 bp downstream
Tssr13850	transcription start site region 13850	1218 bp downstream
Tssr13851	transcription start site region 13851	1362 bp downstream
Tssr13852	transcription start site region 13852	1486 bp downstream
Tssr13853	transcription start site region 13853	1496 bp downstream
Tssr13854	transcription start site region 13854	1513 bp downstream
Tssr13855	transcription start site region 13855	1531 bp downstream
Tssr13856	transcription start site region 13856	1545 bp downstream