rs31710517 SNP Detail

Summary

• ID
  rs31710517
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135775524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACTCTCCA TTCCTCTCTG CAGCAGGCTC TTCATGCCCA
  ACTTGGTGCC ACCCAAGATC CCCGATGGAG AGAGAGTGGA CTTTGATGTG AGTGGTGGCT
  M
  TGGGTGGAGC GAGCCAGGCT GGGGTGGTGA CCAGAGCTTT CATACAAGTG ACAGAGTTCC
  TGATCTTGTG GGCTGCGAGC AGGCCGTTGT TGGCAGGAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45061558	mCV24740619	ABI	CRAMUS_MOUSE	f	SNP		C	C	A
ss145548282	ENSMUSSNP5921805	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31710517					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135775524 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	46 bp downstream
Tssr226	transcription start site region 226	220 bp downstream
Tssr227	transcription start site region 227	1654 bp downstream
Tssr9013	transcription start site region 9013	1882 bp downstream
Tssr9014	transcription start site region 9014	1056 bp downstream
Tssr9015	transcription start site region 9015	50 bp downstream
Tssr9016	transcription start site region 9016	187 bp upstream
Tssr9017	transcription start site region 9017	203 bp upstream
Tssr9018	transcription start site region 9018	248 bp upstream
Tssr9019	transcription start site region 9019	273 bp upstream
Tssr9020	transcription start site region 9020	1019 bp upstream
Tssr9021	transcription start site region 9021	1071 bp upstream
Tssr9022	transcription start site region 9022	1557 bp upstream
Tssr9023	transcription start site region 9023	1576 bp upstream
Tssr9024	transcription start site region 9024	1670 bp upstream
Tssr9025	transcription start site region 9025	1959 bp upstream
Tssr13890	transcription start site region 13890	11 bp upstream
Tssr13891	transcription start site region 13891	227 bp downstream
Tssr13892	transcription start site region 13892	267 bp downstream
Tssr13893	transcription start site region 13893	305 bp downstream
Tssr13894	transcription start site region 13894	1062 bp downstream
Tssr13895	transcription start site region 13895	1072 bp downstream
Tssr13896	transcription start site region 13896	1592 bp downstream
Tssr13897	transcription start site region 13897	1663 bp downstream