rs31711209 SNP Detail

Summary

• ID
  rs31711209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120471317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGAGTTG AAAGCGTATC
  AGGCCAGGCG GGATAGGAAC ATGAAGTCTC TAGCTCCACA GCCCTAAGGG CTGAACCTGA
  ACTGCTGGGT GGCCTTGGTC TCAGTGTAGA CCACAACTTC GTGCTTCCAA GCACCACTGT
  CCTTTCTTGC CTATCAGGAG GAAGCGCAAG CCAACTTCTC CTCTGTGCGC CAACGACCAT
  Y
  CTGCCATCTC CTTCCGTAAA GGCCCTGAGA ACTCAATGGA AGTGATTAAA AAGTTAAATA
  AAAAAAGAAC CAGAAAGAGC TCGGGGATGG TGTATCTCAA TTGGTAGAAT GACCCGCCTT
  GTATGCATCC AGTCCTGGGT TCCAACCCAC CACCAGAAAC CAAACCAAAC AAACACCACC
  CCCAATTCTA TTATTCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48080652	NES11866897	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31711209					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48080652	NES11866897	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120471317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17923	CpG island 17923	23 bp distal
Gm67209	predicted gene, 67209	within coordinates
Rr132707	regulatory region 132707	1084 bp proximal
Rr138575	regulatory region 138575	1883 bp proximal
Rr145656	regulatory region 145656	within coordinates
Tmem121b	transmembrane protein 121B	549 bp upstream
Tssr62778	transcription start site region 62778	443 bp upstream
Tssr62779	transcription start site region 62779	421 bp upstream
Tssr62780	transcription start site region 62780	339 bp upstream