rs31711253 SNP Detail

Summary

• ID
  rs31711253
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78871525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGTATTA GAAAGGGAGA
  TGATCACGCC AGTACACCCA TCTCTGCTTC AGTTCCTGCC TCCAGGTTCT TCCCTTGAGT
  CTCTCTCTGC CTTGCATTCT CTGGACGATG GTTTGGTGAA ACAAGCCCAC TCCTTCCCAA
  GTTGCTTTCG GACATGGTGT TTATCACAGC AACAGAGACA TGGATAGCAA GCTACCATCT
  S
  GGGGCAGAAG CTGAAATATT ATCACCAGGG AAGGGGAGTG GATGCCATTT AAGATACTAA
  TGAGAGTATC TGGCTCAGAG ATAGAGGCGG TATAGATGCA TTGTATACCA TGCCCCTAGT
  GAAGACATGA GAGCAAGGAA CACCCAAATA TTCACCATAA AGTGACACGC TGCAGAAGAC
  AGCCACCACC CTGGGTCGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45562609	mCV24563840	ABI	CRAMUS_MOUSE	f	SNP	C	G					G		G
ss60421441	NES15923009	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		G	G	G	G	G	G	C	G	G
ss135365528	ENSMUSSNP1915128	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G							G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31711253					SNP	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421441	NES15923009	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78871525 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	within coordinates
Gm66687	predicted gene, 66687	1236 bp downstream
Rr578452	regulatory region 578452	178 bp proximal