rs31711382 SNP Detail

Summary

• ID
  rs31711382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43085890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGATCTCTT GAGTGTTGGG GAGGCAGACC TATGTCATTG
  CATCAAGAGA TGGCGGAAAC ACTTTTGTGC TTGCCTGTAG AGGAGCTGTT GCCCACTACT
  R
  GAGGACCTGA GGCAGAGGAC CCAGAAGTGT CACTTTGTCT TCCACTTCCC CAGACACCCT
  CATCTTGGTG CTAAGACGCC TATGCTGGAG GGTCCAACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46061415	mCV22666153	ABI	CRAMUS_MOUSE	f	SNP		A	G						A
ss51478228	NES13970381	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	A	G	G		A	G	A	A		G
ss322196972	CHEV_7_50691836	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31711382					SNP	G	A	G	G	G	G	G	G	A	G	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478228	NES13970381	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43085890 () rs orientation: forward

Symbol	Name	Function Class
Gm52993	predicted gene, 52993	475 bp downstream
Lim2	lens intrinsic membrane protein 2	470 bp downstream
Nkg7	natural killer cell group 7 sequence	672 bp upstream
Tssr2210	transcription start site region 2210	542 bp upstream
Tssr65999	transcription start site region 65999	500 bp upstream
Tssr66000	transcription start site region 66000	666 bp upstream
Tssr66001	transcription start site region 66001	1120 bp upstream
Tssr66002	transcription start site region 66002	1134 bp upstream