rs31712085 SNP Detail

Summary

• ID
  rs31712085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45108355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGCACA GTGGGGAAAA
  ATAATGGGAT ACTGTCTTTA ATCCCACCAC TGAGAGACTG GGCGAGAAGA CAGGAGGATC
  TCTTGATAGG AGGCAACCTG GTCTACATTG TGATTTCCAT GCTAGCTAGA GAGACACCGC
  CTCTCCCCAG CCCAGCAGTC CTCATCTGTA TTCTGTAATT ACCCCCATTT TCCAGTTTCT
  R
  ACATCCTGGT GGGTTTAGTT GCTCTACATA CTCCTATTGT CTACACTAGT CCTGCCACCA
  CTCCCTTCCA AGACGTCTAT CCGGATGCCC AAACTATGGG GATGGCAAGT AAACGCACAT
  GCTCGGTAGT GCCCAATACC CCCGCTTCTT ACCTGCACAT CCTGGAAGAG TGCACGGCCC
  CCGCGATCGT TCTGAAACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46061438	mCV22696576	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31712085					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45108355 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19060	CpG island 19060			99 bp proximal
Cpgi19061	CpG island 19061			893 bp proximal
Ftl1	ferritin light polypeptide 1			Intron
				Noncoding-Transcript-Variant
Gm10252	predicted gene 10252			538 bp upstream
Gm56125	predicted gene, 56125			734 bp upstream
Gm73429	predicted gene, 73429			1251 bp downstream
Rr380754	regulatory region 380754			404 bp upstream
Rr646449	regulatory region 646449			972 bp distal
Rr646450	regulatory region 646450			710 bp proximal
Rr646451	regulatory region 646451			1157 bp proximal
Rr646452	regulatory region 646452			1588 bp proximal
Tssr66539	transcription start site region 66539			845 bp downstream
Tssr66540	transcription start site region 66540			741 bp downstream
Tssr66541	transcription start site region 66541			730 bp upstream
Tssr72390	transcription start site region 72390			729 bp upstream
Tssr72391	transcription start site region 72391			707 bp upstream
Tssr72392	transcription start site region 72392			583 bp upstream
Tssr72393	transcription start site region 72393			518 bp upstream
Tssr72394	transcription start site region 72394			372 bp upstream
Tssr72395	transcription start site region 72395			468 bp downstream
Tssr72396	transcription start site region 72396			500 bp downstream
Tssr72397	transcription start site region 72397			757 bp downstream
Tssr72398	transcription start site region 72398			908 bp downstream
Tssr72399	transcription start site region 72399			1991 bp downstream