rs31712384 SNP Detail

Summary

• ID
  rs31712384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44890421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGACAC AGAAAGGGCA
  GGGAAGGCCT CGTGGGTTCA CGATGTGGGA ACTGCCTTCC AGGGGGCCGG AGGGCCTGGG
  GAGGTCGCTA AGCTTCCATG CCGAGGCCTC CCGGACCTTT TCACCCAGAC AGCCGCTGGA
  GAGTTCAGCG GGGATCTCGA GGCCCGGGCG GTGAGACCGA CGGGGCGGCC ATTGTGCTGC
  Y
  CCAGGCTCTC CACAGGACGC CAGGAAGGAG GGAGGGAGGG GGGAGTCGCG AGGTCAAGGT
  CACCGTGCCC CCTCTCCGTC AGAACCCGGA AAACTGCCTC CTCGCTCCTC GGCTGCGCCT
  GCCTGAGGCC AGGCCTGAGA GTCAACCTCC CGCAACTCTT GACGGCTGCT CTATTGGGAA
  GGCGCCTAAG AGGCGGCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss46061447	mCV27566874	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss149131936	ENSMUSSNP295091	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs31712384					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44890421 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	1882 bp upstream
Cpgi19038	CpG island 19038	within coordinates
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	88 bp upstream
Tssr66503	transcription start site region 66503	77 bp upstream
Tssr66504	transcription start site region 66504	112 bp upstream
Tssr72353	transcription start site region 72353	1931 bp upstream
Tssr72354	transcription start site region 72354	1894 bp upstream
Tssr72355	transcription start site region 72355	1864 bp upstream
Tssr72356	transcription start site region 72356	1710 bp upstream
Tssr72357	transcription start site region 72357	1702 bp upstream
Tssr72358	transcription start site region 72358	1677 bp upstream
Tssr72359	transcription start site region 72359	1647 bp upstream
Tssr72360	transcription start site region 72360	1610 bp upstream
Tssr72361	transcription start site region 72361	1587 bp upstream