rs31712421 SNP Detail

Summary

• ID
  rs31712421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190954873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCC CCCCCTTTTT AATTATTTTC
  Y
  TTTGTTAACA TACAAAGAAA TGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45061783	mCV24198962	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss146503174	ENSMUSSNP3263569	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31712421					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190954873 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	1167 bp proximal
D730003I15Rik	RIKEN cDNA D730003I15 gene	1778 bp upstream
Gm70871	predicted gene, 70871	1044 bp downstream
Rr26272	regulatory region 26272	197 bp distal
Rr29193	regulatory region 29193	1127 bp proximal
Rr396715	regulatory region 396715	1476 bp upstream
Tssr10744	transcription start site region 10744	1767 bp upstream
Tssr10745	transcription start site region 10745	1786 bp upstream