rs31712533 SNP Detail

Summary

• ID
  rs31712533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89777213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTGCCTT CTAAGCACTG GACTTAAAGG TGCATTATCA
  CCACCATAAC CACCACCATC ACCCCCATCA ACACTACCAC CACCACCACC ATCACCACCA
  Y
  CATCACCACC TCCATTACCA CTACCCATTA CCATCACCAT CACAACTACC ACCACAACCA
  GCACCAGCTC TGACTGGGTA ACTTTTTTGT TTTTGTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46061124	mCV22591555	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss322314270	CHEV_7_97276515	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31712533					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89777213 () rs orientation: forward

Symbol	Name	Function Class
2310010J17Rik	RIKEN cDNA 2310010J17 gene	within coordinates
Cpgi19396	CpG island 19396	1703 bp proximal
Picalm	phosphatidylinositol binding clathrin assembly protein	1498 bp upstream
Rr168173	regulatory region 168173	787 bp proximal
Rr400433	regulatory region 400433	1223 bp upstream
Tssr67692	transcription start site region 67692	1493 bp upstream
Tssr67693	transcription start site region 67693	1703 bp upstream
Tssr73520	transcription start site region 73520	1334 bp downstream
Tssr73521	transcription start site region 73521	1643 bp downstream
Tssr73522	transcription start site region 73522	1842 bp downstream
Tssr73523	transcription start site region 73523	1888 bp downstream
Tssr73524	transcription start site region 73524	1921 bp downstream
Tssr73525	transcription start site region 73525	1989 bp downstream