rs31713449 SNP Detail

Summary

• ID
  rs31713449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18916442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATCCCGG ACGAACTGGC
  GCCCACCTAT AGCCTGGACA CTCGTTCTGA GCTGCCCTCC AGCCGGCTAA AGCTAGACTG
  GGTGTATCCT TTGACTAGCT CCCTTTCTGC CCTCTTGGAA GAGGGTAAGT CCTGGTACGG
  AGAGGGAGGC GCAGGGCAGG GCTACAGCTG GGCTTTCTCA GGCCACAGTG GGGGAAGTGG
  R
  GGGTCGGAAG GTGAAGGGAG TCCAGAGGGA AACAGAGTAG CTAGAATGAC TCACCTGCTG
  TGAGTGACTC ATTCAGGGAA TGTTTGAAGC GGAATGTTTA ACTCAAGGAT GATCTTGAGA
  ACTTGGTCTT CCTGCCTGCA CCTTCAAGGG CTTGGATTAC AGGATTTTGT GCACCACCAC
  ATCTGGCTCT CATGGATATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46061484	mCV22832404	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148469651	ENSMUSSNP5856402	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31713449					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18916442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18453	CpG island 18453	944 bp distal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Mir330	microRNA 330	955 bp downstream
Rr643020	regulatory region 643020	1303 bp distal
Rr643021	regulatory region 643021	909 bp distal
Rr643022	regulatory region 643022	1809 bp proximal
Tssr64797	transcription start site region 64797	1315 bp downstream
Tssr64798	transcription start site region 64798	1296 bp downstream
Tssr64799	transcription start site region 64799	1192 bp downstream
Tssr64800	transcription start site region 64800	1060 bp downstream