rs31714169 SNP Detail

Summary

• ID
  rs31714169
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36350476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAGCTAGC AGAAAGAGAA GTAAGGAATG
  GCTGGAAAAC ACCGGCAAGT TTGGAAAGGG AGACTGAGAC CCGGCCCTTA GTGCTGTAGC
  TTAGCATCCA CAGCCCGAGC TGCCCCTGAC ACAGCCTTGA CATTGACCCA TGAGGAGCTG
  S
  GGCAGCTTCC CTGCTGTACC TGTGCCCACC TGCCTGCGGC CTAGGAAGGG ACTCTGTCAA
  ACTGTGGTCT CCTTGTATAG AGGGTGGAGT AGGCAGCCCA GGGAGCTGTG GAGGGAAGGC
  CTGCCATCGT ACAGGAGGAG CAGACCGGGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45062591	mCV27594779	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C	C
ss148924931	ENSMUSSNP4812551	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		C
ss319688343	CHEV_1_36368240	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31714169					SNP	C	C	G	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36350476 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Gm70518	predicted gene, 70518	758 bp downstream
Rr409285	regulatory region 409285	1217 bp distal
Rr409286	regulatory region 409286	588 bp distal
Tssr11252	transcription start site region 11252	1772 bp upstream