rs31714314 SNP Detail

Summary

• ID
  rs31714314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31467972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATTAGC GAAATACAAC
  CATAACCCAT TTCAAAGTCT CTTTCTATGA AATTGGCTTC TTACCTGTTC AATGACAGTT
  TTCAACCACC ACTGAGGACC CATAAGAGTT ATAGCTGCGA TAATTTTGGC ATGCAGCACT
  CCCAGCGCCC AGTCCTATGA TTAGAGAAAA ATAAAGAATA CTTAACACAT CTTCACTGAC
  Y
  GTAAAGGTAA GCCTATCAAA AAAAGCTGTT TAGTTTTGGA ACAGAAGCTG CCCAGGACTG
  GTAACACTCA GCTAAGTTAC TGATTGCTGC TAGCTTCTAG GAGACAGTTC TCTTTAAGAG
  CTCTACCACT GGTGGGTGTA CTGGCTAACT TGACACAGGC TGGAGTTACC ACAGAGAAAG
  GAGCTTCAGT TGGGGAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39317921	mCV23426749	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss51630454	NES14594924	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	C	T	T	T	T	T
ss147445839	ENSMUSSNP5954492	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31714314					SNP	C	C	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630454	NES14594924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31467972 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	81 bp downstream
Tssr133931	transcription start site region 133931	112 bp downstream
Tssr133932	transcription start site region 133932	145 bp downstream