rs31714403 SNP Detail

Summary

• ID
  rs31714403
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153062698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG GAGGGGATGC AAATCTTGGC
  K
  TATCCCACAC TGTCCTGGGA ACTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45062795	mCV24779911	ABI	CRAMUS_MOUSE	f	SNP		T					T	G
ss60822403	NES16493732	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	G	T		G	G		G	G		G
ss145737881	ENSMUSSNP3672322	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
ss320071241	CHEV_1_155034082	CHEVERUD	SCREENING_POP	f	SNP										T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31714403					SNP	G	T	T	T	G	T	T	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822403	NES16493732	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153062698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	485 bp distal
Lamc2	laminin, gamma 2	505 bp upstream
Rr13130	regulatory region 13130	303 bp proximal
Rr25076	regulatory region 25076	1294 bp proximal
Rr28719	regulatory region 28719	297 bp distal
Tssr14250	transcription start site region 14250	896 bp upstream
Tssr14251	transcription start site region 14251	860 bp upstream
Tssr14252	transcription start site region 14252	830 bp upstream
Tssr14253	transcription start site region 14253	816 bp upstream
Tssr14254	transcription start site region 14254	797 bp upstream