rs31714468 SNP Detail

Summary

• ID
  rs31714468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36352009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaaTTTACC TGGAACCCAT ATCCATAAAT
  GATGAGGGAA ATGAGGGGTT AAGGCTGCCA GAGACAGGAC TAAGGATACC CTGTCCCCTC
  ATCTAAAGCT GCAGAAGTCG GAGCCCAGAA AGTCCTGCCA GGGACAGAGA GAGTGATAGC
  R
  TGGCCAGAAA TGAATGGACA CCAAGTTCAT TTGGGGACTC AGGACACAGT GATAGAGTTT
  TTTCCTTTGT GGATCAAGGC GGGAGCTCTG ACCCCTTTTC CATCTGGGGC CAAACAGTTT
  GGATTGGTGA CTTCCTTTCC AGGTAATTCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45062150	mCV27594888	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G	G
ss51238002	NES14282049	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	G	G		G	G	A	G		A
ss148924945	ENSMUSSNP1168500	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss319688346	CHEV_1_36369773	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31714468					SNP	G	G	A	G	G	G	A	G	G	G	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238002	NES14282049	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36352009 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Gm70518	predicted gene, 70518	within coordinates