rs31714553 SNP Detail

Summary

• ID
  rs31714553
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60439199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAAAAACC CAATAACAAA TGAATTATAT
  TAAGTTTTAA AAATTATTTG TGAAATGAAT TTACTATACC AGCAAATCAC AGTAAACTTC
  ATCCTTTTGT TTTTTACTAA GAAAAGCTGG AATTTTTAGT TTCAATATTT GGCAAAACAT
  W
  tgtgtgtttg tgtgtgtgtg tgtgtgtgtg tgtgtgtAGA GGGAAAATTC AACACAAATT
  TATTTGCGAT AGAGCTTCAT ACCCAGACAA TACCTCCTTA GATGTTAGTG AAATAACTGT
  TAAGAATCAG TCAACAGAGT TTCTATGTGC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45562968	mCV22695992	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss135219438	ENSMUSSNP4077264	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
ss320786581	CHEV_3_60335700	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31714553					SNP	A	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60439199 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577419	regulatory region 577419			106 bp proximal
Tssr29304	transcription start site region 29304			1699 bp downstream
Tssr29305	transcription start site region 29305			1453 bp downstream
Tssr29306	transcription start site region 29306			526 bp downstream