rs31716788 SNP Detail

Summary

• ID
  rs31716788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127310174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTCCAT GCCTTCTTGT
  CTCCTCCAGC ACCCACTCAG ACGCACACAT GGCCCCGACA CACACTCAAA TGAAAGGGAA
  GAAGATGAGA GTGTCTCGCA TGATTTTTAT TTGAAGCTGC GCTGTCACTA GATAGGACGA
  GTCTGCTGTG CTATGTGTGT GAGGGGTGTC TGTGACGTTT TGGTGTGACC ATGTCCACCA
  Y
  GACTGGCAGC GTTTCCAAAC GGTAAGAAGT AAAATCTCTG CTTGTCACAC CTGCGTGACC
  GTGGGCAAGT CATTTGTCTC ATTGCCTCCT CTATTATGGA ATGAGTTAAT GTGTATATAC
  AAGCATTCAG GATAGTGCTT GGCACACATG AATACCCAAT ACATACTGCT GGTTAGTGTG
  TGTGTGTGGC CACTGCTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46062189	mCV24290385	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss145882023	ENSMUSSNP4676963	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31716788					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127310174 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19760	CpG island 19760	1785 bp distal
Ctf1	cardiotrophin 1	1734 bp upstream
Rr655876	regulatory region 655876	1579 bp distal
Rr655878	regulatory region 655878	121 bp proximal
Rr655879	regulatory region 655879	1244 bp proximal
Rr655880	regulatory region 655880	1953 bp proximal
Tssr69270	transcription start site region 69270	1707 bp upstream