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rs31717793 SNP Detail
Summary
  • ID
    rs31717793
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:3684207 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                                     
    AGTCCAGTAT TACATTTCTG TTTGTTCTAG GGTTTTGGTC TTTCTTTTTC CTTCCATTAT
    TATTATATTT TTAAATGGAA CATATCTCAC TTTGTCACTA TATAATTTGA GTTGGCTTTG
    AATTTCCATT CTTCCTGCCT CTGCCTCTAA AATATTAAAA TTAGAAGTGT GAGTCATCAG
    GCCCAGTTCA GTGTGTGAAC TCCTCCTCTT TCTCTTTCTT TCTTCCTTCC TTTCTTTCTT
    CCTTCCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTCCTT
    Y
    CTTCCTTCCT TCCTTCCTTC CTTCCTTCCT TCCTCTCTCT CTCTCTCTCT CTCTCTCTCT
    CTCTCTCTCT CTCTCTCTCT CTCTTTCTCT CTCTCTCTCT GATATATACA CAAAAGATAG
    GAACACTTGA TCAAGCTCTC TCACATAGCT AACTATGAAC AGAAGTTACT TTTACTAATC
    TGTTTACTTT TCAACATATT TTCACTTTCT CTGTACTTAA GAAATGGTGT CTTGTCTCTA
    CTGAAACCAA TATTGTGGGG AATAGATAAA TACAACATTA CTATGAAATT CTCCAAGAAA
                                                                     
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
C57BL/6J
DBA/2J
ss45563608 mCV24832563 ABI CRAMUS_MOUSE f SNP C C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
C57BL/6J
DBA/2J
rs31717793 SNP C C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:3684207 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hnf4g hepatocyte nuclear factor 4, gamma Intron
Rr573144 regulatory region 573144 67 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory