rs31717834 SNP Detail

Summary

• ID
  rs31717834
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12826538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGAGGTT AGTGGATCGG
  TAGGAATTCA CTGGCCAAGT AAGGGAGAGC AGAAGCAAAG ACGTTTCCTG TTAGTGCTTG
  CTATGCTAAC TGACCTGGAA AGTATGGGCT AAGAGGGGCT TTGGAGAAAG AAATCAGGTG
  ATAAGCCTGG GAAAGTTGGG TTCAGGTTCT GTAGGGCCTC CAATGCCAAG CGTGGTGTTT
  R
  TACTCAATAC TGTGAGTAGC CTGTGGTACC AGCAGTAGCT CTTTGAGTCC CAAGTTTAAT
  CATGAGAGTA TTGGATTGAG GAGCAACCAT TTATCTTATT ATTTGGTAGC TGTTTTTTAT
  TGGGCCTTGG CTGTCCTGGA ATTTTAGTTC TGTAGACCAG GCTGCCTGCT TGTTTCTGCC
  TCTGCAGTGT TGGGATAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss39318840	mCV25341267	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss51593107	NES14609204	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G		G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs31717834					SNP	A	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51593107	NES14609204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12826538 () rs orientation: forward

Symbol	Name	Function Class
6030458C11Rik	RIKEN cDNA 6030458C11 gene	1803 bp upstream
Cpgi6961	CpG island 6961	1096 bp distal
D15Mit199	DNA segment, Chr 15, Massachusetts Institute of Technology 199	164 bp proximal
Drosha	drosha, ribonuclease type III	within coordinates
Rr311575	regulatory region 311575	within coordinates
Rr369910	regulatory region 369910	1547 bp downstream
Rr369911	regulatory region 369911	1311 bp downstream
Tssr130744	transcription start site region 130744	1619 bp downstream
Tssr130745	transcription start site region 130745	1569 bp downstream
Tssr130746	transcription start site region 130746	1545 bp downstream
Tssr133797	transcription start site region 133797	1848 bp upstream
Tssr133798	transcription start site region 133798	1798 bp upstream
Tssr133799	transcription start site region 133799	1777 bp upstream