rs31720317 SNP Detail

Summary

• ID
  rs31720317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:175795954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGAGTTC TGTTTTCTTC
  TTTGATTAAA GAGTCACTGA ATGTGCACAT GACACCTTAC TTTTAATGAA TGCTACAATA
  AAATATCTTG ATTTGGGGGT CTTAAGCCAT TAAGTACACC TGGATTCATC CCAAAGTTTT
  AGATAAATTA TCTAGAAGCT TCTATTTTTT CATAAGCAAT TTTGGTGGTT CTTTGCTTGC
  Y
  TTCAAATTTT TATGGTTGTT ATTACTTATT TATTTAATAT TTTAAATAAA TATTAAATGT
  TTTGCCTGCA TGTATATATA TGTGTGTGCA ATTTATGTGC CTGGTGTCCT CAAAGGTCAG
  AAAAGGGCAA TGGATACCCT AGAACTGGAA TTACTGGATA TTGTGAGTCC CTTCATGGGT
  TCTAGGAATT TAACCCAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45062752	mCV24041777	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146327524	ENSMUSSNP6665165	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss320153327	CHEV_1_177898519	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31720317					SNP	T	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175795954 () rs orientation: forward

Symbol	Name	Function Class
Pld5	phospholipase D family member 5	Intron
Rr423868	regulatory region 423868	1753 bp distal