rs31720799 SNP Detail

Summary

• ID
  rs31720799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131566582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTGTAAG ATTGATTTTC CTACGGGGAG
  CTTTGCGTAG GACTTTGAAG TTTTTGTTTT ATTTGCTTGG ttgatttttt gagacatggt
  ctcactaggt aggtcaagct gccctccact ctttatttag ATGGTTTTAA aatccctact
  R
  ctatttgtgt actgatgaaa tcggaggttt tgcaatagaa gtcatattgt ctgaacggtg
  cctttcagtt cctgatttaa ctctctctct ctctctctct ctctctctct ctctctctgt
  gtgtgtgtgt gtgtgtgtgt gtgtaagact                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45062371	mCV25112455	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss319974771	CHEV_1_133535421	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31720799					SNP	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131566582 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr12195	regulatory region 12195	1182 bp distal
Rr28482	regulatory region 28482	within coordinates
Rr366988	regulatory region 366988	447 bp downstream
Tssr8635	transcription start site region 8635	548 bp downstream
Tssr8636	transcription start site region 8636	506 bp downstream
Tssr8637	transcription start site region 8637	481 bp downstream
Tssr8638	transcription start site region 8638	440 bp downstream
Tssr8639	transcription start site region 8639	360 bp downstream
Tssr8640	transcription start site region 8640	348 bp downstream