rs31721069 SNP Detail

Summary

• ID
  rs31721069
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128517603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTG TTGGAGTCAT AGTCTCCAGA
  M
  CCCACTTCTT CAGAGTAGTT ATCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45062569	mCV23203433	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss145462233	ENSMUSSNP6095547	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss319965165	CHEV_1_130486443	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31721069					SNP	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128517603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	918 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	1217 bp upstream
Tssr8536	transcription start site region 8536	1088 bp upstream
Tssr8537	transcription start site region 8537	1411 bp upstream
Tssr8538	transcription start site region 8538	1439 bp upstream
Tssr8539	transcription start site region 8539	1453 bp upstream
Tssr13461	transcription start site region 13461	1404 bp upstream
Tssr13462	transcription start site region 13462	1234 bp upstream
Tssr13463	transcription start site region 13463	1134 bp upstream
Tssr13464	transcription start site region 13464	1092 bp upstream
Tssr13465	transcription start site region 13465	1079 bp upstream
Tssr13466	transcription start site region 13466	1008 bp upstream
Tssr13467	transcription start site region 13467	966 bp upstream
Tssr13468	transcription start site region 13468	880 bp upstream
Tssr13469	transcription start site region 13469	826 bp upstream
Tssr13470	transcription start site region 13470	736 bp upstream
Tssr13471	transcription start site region 13471	664 bp upstream
Tssr13472	transcription start site region 13472	596 bp upstream
Tssr13473	transcription start site region 13473	581 bp upstream
Tssr13474	transcription start site region 13474	520 bp upstream
Tssr13475	transcription start site region 13475	499 bp upstream
Tssr13476	transcription start site region 13476	487 bp upstream
Tssr13477	transcription start site region 13477	421 bp upstream
Tssr13478	transcription start site region 13478	950 bp downstream
Tssr13479	transcription start site region 13479	979 bp downstream
Tssr13480	transcription start site region 13480	1301 bp downstream