rs31721384 SNP Detail

Summary

• ID
  rs31721384
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164269782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGCCCAGA CCCTCAGGTT TAGAGCCACT GCTCTAATGG
  ATCGCCTAGC TACTTAGGGC TGAAGGAAAG CAGACCATAA CTTCAGCACC AGCAGCAGCA
  S
  CACTTTCACA GACCCACACA GCGATGCTCA GAAACAGGGA CATTACAACA AGGACATGAA
  TTTAAAAGGT TGTCAATACT TTCGAGCTGG AAGGTTTGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45062761	mCV24721461	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31721384					SNP	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164269782 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13722	regulatory region 13722	1419 bp proximal
Rr25449	regulatory region 25449	1354 bp proximal
Rr31656	regulatory region 31656	within coordinates
Tssr9785	transcription start site region 9785	1013 bp upstream
Tssr9786	transcription start site region 9786	1051 bp upstream
Tssr14743	transcription start site region 14743	637 bp upstream
Tssr14744	transcription start site region 14744	595 bp upstream