rs31721492 SNP Detail

Summary

• ID
  rs31721492
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191176917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTCCACA GTGAAACTCC CTAGCAATGT TTTGCTCAGA
  TTAATGATTA AATGGCTGTG TGTATTTTGA CTAGAAGCCA ACAGCTGGGC AAGGTAAGAG
  K
  GAGACATGGT GCCACGGTCA GCCAGGAATG AGAATCAGTC AGGCTTCTGT GCAGATAACC
  CAAGGCCTTG CACATGGATT CCCCCCAGGA CTTCAACTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45063229	mCV23930923	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		T
ss49546438	NES12907400	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	T	G	T		G	T	T	T		T
ss146505928	ENSMUSSNP3356667	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							T
ss320195291	CHEV_1_193268599	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31721492					SNP	T	G	G	G	G	G	G	G	G	T	G	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546438	NES12907400	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191176917 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr372646	regulatory region 372646	917 bp upstream
Tssr15793	transcription start site region 15793	1083 bp downstream