rs31721839 SNP Detail

Summary

• ID
  rs31721839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36053428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTTTTTTCCT CTCAGCTAGT
  R
  AAGACTGAGT CAGGCAGTCA GACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	NOD/ShiLtJ
ss45563083	mCV24305384	ABI	CRAMUS_MOUSE	f	SNP	A	G			G	G
ss51452914	NES14433130	PERLEGEN	MM_PANEL2	f	SNP			A	A			G
ss134776671	ENSMUSSNP2913031	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	NOD/ShiLtJ
rs31721839					SNP	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51452914	NES14433130	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36053428 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13078	CpG island 13078			958 bp proximal
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)			Intron
				Noncoding-Transcript-Variant
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand			634 bp upstream
Rr397641	regulatory region 397641			1275 bp upstream
Rr575296	regulatory region 575296			464 bp proximal
Rr575297	regulatory region 575297			666 bp proximal
Rr575298	regulatory region 575298			1389 bp proximal
Rr575299	regulatory region 575299			1491 bp proximal
Tssr28858	transcription start site region 28858			1138 bp upstream
Tssr33012	transcription start site region 33012			1285 bp downstream
Tssr33013	transcription start site region 33013			1338 bp downstream
Tssr33014	transcription start site region 33014			1371 bp downstream
Tssr33015	transcription start site region 33015			1383 bp downstream