rs31722259 SNP Detail

Summary

• ID
  rs31722259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43113965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTGGGGT TTGGACTCAG GTCTGAAGGA GGAGGATTGA
  AGTCTGAACC CCTGGGTTTG AGGGAAGAGG GGGTGGGTCT TGACCTCAGA GTCTGAAGGA
  R
  GGCTGGAGTC TGGAGTCCTC AGACTGATGG AATAAGATTG GGGTTTGGAC ACCTAAGTTT
  GCGGGCTGAG GTATGCACCT CTGGGTCCAA GGGAGGAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46061372	mCV22871764	ABI	CRAMUS_MOUSE	f	SNP		A	G				A
ss51478101	NES13969835	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	G	A	G	A	A
ss149073692	ENSMUSSNP5099952	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31722259					SNP	G	A	G	G	G	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478101	NES13969835	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43113965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	290 bp proximal
Cpgi18933	CpG island 18933	1621 bp proximal
Etfbl	electron transferring flavoprotein, beta polypeptide like	954 bp downstream
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	1189 bp upstream
Rr645966	regulatory region 645966	302 bp proximal
Rr645967	regulatory region 645967	967 bp proximal
Rr645968	regulatory region 645968	1029 bp proximal
Rr645969	regulatory region 645969	1037 bp proximal
Rr645970	regulatory region 645970	1729 bp proximal
Tssr66006	transcription start site region 66006	1428 bp downstream
Tssr66007	transcription start site region 66007	1356 bp downstream
Tssr66008	transcription start site region 66008	1326 bp downstream
Tssr66009	transcription start site region 66009	1315 bp downstream
Tssr66010	transcription start site region 66010	1467 bp upstream
Tssr72134	transcription start site region 72134	289 bp upstream
Tssr72135	transcription start site region 72135	1022 bp downstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates