rs31722390 SNP Detail

Summary

• ID
  rs31722390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:26865804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAA GGGAGCCCGA GAGCAGAGTC
  Y
  GACCCGACTG CCTTCCTCCC AACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46062692	mCV22973949	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss148619796	ENSMUSSNP1217376	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31722390					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:26865804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18625	CpG island 18625	1557 bp distal
Cpgi18626	CpG island 18626	within coordinates
Egln2	egl-9 family hypoxia-inducible factor 2	within coordinates
Rr400185	regulatory region 400185	696 bp upstream
Tssr2152	transcription start site region 2152	161 bp downstream
Tssr71351	transcription start site region 71351	3 bp downstream
Tssr71352	transcription start site region 71352	48 bp downstream
Tssr71353	transcription start site region 71353	91 bp downstream
Tssr71354	transcription start site region 71354	333 bp downstream
Tssr71355	transcription start site region 71355	353 bp downstream