rs31722565 SNP Detail

Summary

• ID
  rs31722565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90905453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA GGATTGCATT TGTTGAGTCA
  R
  GTGTGATGCT GATGGTGGAC TCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45803049	mCV23119072	ABI	CRAMUS_MOUSE	f	SNP		A	A					A	G
ss46597760	NES10447063	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	G	G		G	G	G	G	A	G	A
ss148817057	ENSMUSSNP4890695	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31722565					SNP	A	A	A	A	G	G	G	A	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46597760	NES10447063	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90905453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16042	CpG island 16042	1749 bp proximal
Cxcl5	C-X-C motif chemokine ligand 5	1766 bp upstream
Gm72413	predicted gene, 72413	829 bp downstream
Rr614399	regulatory region 614399	594 bp proximal
Rr614400	regulatory region 614400	1357 bp proximal
Tssr47178	transcription start site region 47178	1755 bp upstream