rs31722566 SNP Detail

Summary

• ID
  rs31722566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90905502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACT TCCCATTAGC TTCTCACAAT
  R
  CGATCACCAA ACCTCCCAAC TTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45747710	mCV23119071	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss46597761	NES10447065	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	A	A	A	A	A		A	A	G	A		G
ss148817061	ENSMUSSNP1769390	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
ss321608229	CHEV_5_91186669	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31722566					SNP	G	G	G	G	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46597761	NES10447065	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90905502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16042	CpG island 16042	1700 bp proximal
Cxcl5	C-X-C motif chemokine ligand 5	1717 bp upstream
Gm72413	predicted gene, 72413	780 bp downstream
Rr614399	regulatory region 614399	545 bp proximal
Rr614400	regulatory region 614400	1308 bp proximal
Tssr47178	transcription start site region 47178	1706 bp upstream