rs31722569 SNP Detail

Summary

• ID
  rs31722569
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90906012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTATAACC GACTGCCTTG
  GTATGAAGGC CTTTAGTTAC AGGAAGTCAT CTCATCTTTC ATCACCAGGT GGCCCCTCCA
  GGGTCCCCAC CCCCAACCCC CGCCAAGCCC CTGGGGAAAG CATCCCTCCT CTGAACTCCA
  AGAAGTTGCT TGGAGGGAGT CAGAACGGAT GCTATCTTGC TGGCAAACTG AATCAAACCC
  W
  TGCACCAAAC TCGCAGATAA GTCCCACGGA TGAGTCCCTC AGCTGCACCA ACCTCCTTTA
  GCTTCTACCC ACTGTCAAAT CCCTATCTGG CAGGGGAGCC ACATTAGAAA GCACAGCAAG
  AAGCCCCTGG TGTTGCCTCC GGCTCCAAGC ACAGGACAGA CTGCTCCTAA CTGAATGGCA
  AAGGGTGCAA AGATTTTATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46597764	NES10447068	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31722569					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46597764	NES10447068	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90906012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16042	CpG island 16042	1190 bp proximal
Cxcl5	C-X-C motif chemokine ligand 5	1207 bp upstream
Gm72413	predicted gene, 72413	270 bp downstream
Rr614399	regulatory region 614399	35 bp proximal
Rr614400	regulatory region 614400	798 bp proximal
Tssr47178	transcription start site region 47178	1196 bp upstream