rs31722627 SNP Detail

Summary

• ID
  rs31722627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156819143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGAGGT TGCTAAAGCA
  GCTTTCCTGA GCAATGTATC CTGCATCCAT CTTAAAACCC CATAGCAGAA ACCAGCAAAA
  GCAACACATC TATTGTATGT TGTCCCATGA GGATGAAATA AAAAACCAAT TTGAAATAGA
  GGTGAGACTA TTCAGTAGGC CTGGGGAGAC TGAACATTCA TTCACACTTC ACACTAGGGA
  R
  ACCTTTTTTT TTTTTTTTAG CTTTTTCAAA AAGAGTTGTT TATTTATTTA TTTTATGTAT
  ATGAGTACAC TGCAGCTGTC TTCAGACACA CCAGAAGAGG GCATTGGATC CCATTACAGG
  TGGTTGTGAG CCACCATGTG GTTGCTGGGA ACTAAAATCA GGTCCTCTGG AAGTGCTTTT
  AATCACTAAG CAATCCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45062877	mCV24596242	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31722627					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156819143 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm39685	predicted gene, 39685	1880 bp upstream
Rr396431	regulatory region 396431	990 bp downstream
Rr421298	regulatory region 421298	48 bp distal
Rr421299	regulatory region 421299	87 bp proximal
Rr421300	regulatory region 421300	971 bp proximal