rs31722969 SNP Detail

Summary

• ID
  rs31722969
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60059012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGATTTA GAGAAATAGT
  AGAAAACGAT GAAATTGAGG AAAAAACAAG TAGACTTAGA GAGATACCAA AAAAAAAAAA
  ATGTGTATAA TACTGGGTTA TTGGAATTGG GAGGGTACTC ACCATTTTTG ATTTTGCTTT
  CCAAGTCAGG TTTCAAAGAG TTTAACGAGA CAGCACCACC ACTTGCCTGA AGAGAGCAGG
  M
  TGGAAGTCAG CATACTGTCC AATCACAGCA AGTTGAAGAA AAACAACAGT TGAGGGGCAG
  CCAGAATTTT GTTCAAATCA TGGCACCATT ACCACTATAG TAAGTCATCC AATCTGGACA
  GGAACTTGAA AACATTTTAT TAAGAAGTCT ATTGCAATGG GAAGAGGGGA GAATCATCCC
  ACAAAGATTC TTAAAGCTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39318913	mCV27552957	ABI	CRAMUS_MOUSE	f	SNP	A	A	C					C
ss52559997	NES15632517	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		C	C	A		A	C	A	A
ss147991266	ENSMUSSNP5502161	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
ss324985302	CHEV_15_60018718	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31722969					SNP	A	A	C	C	C	A	C	C	C	C	A	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52559997	NES15632517	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60059012 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	205 bp proximal
Tssr4605	transcription start site region 4605	41 bp downstream
Tssr134460	transcription start site region 134460	266 bp upstream
Tssr134461	transcription start site region 134461	132 bp upstream
Tssr134462	transcription start site region 134462	30 bp upstream
Tssr134463	transcription start site region 134463	11 bp downstream
Tssr134464	transcription start site region 134464	105 bp downstream
Tssr134465	transcription start site region 134465	159 bp downstream
Tssr134466	transcription start site region 134466	172 bp downstream
Tssr134467	transcription start site region 134467	208 bp downstream
Tssr134468	transcription start site region 134468	235 bp downstream
Tssr134469	transcription start site region 134469	266 bp downstream