rs31723271 SNP Detail

Summary

• ID
  rs31723271
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90908315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC TGTCTCTCTC
  TCTCTCTCTG TCTCTCTCTG TCTCTCTCTC TCTCTGTCTC TCTGTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TGTGTGTGTG TGTGTGTGTG
  TGTGTGTTAG GATAAACTGA AGAATTTTAG TTACTGATAT AAGTCTTTTC TCAACAGTGA
  M
  AAAAAGAAAG CTAAGCGGAA TGCACTCGCA GTGGAAAGAA CGGCCAGTGT TCAATAGAAA
  GATTTCTGAG GACTCTGACC CCAGTGAAGA TAAGAAGAAA GGGCTGATTC TCTCCACCCA
  CGGATTTTCT TTATGAACTC CCTGCTTTGA TGAGAAAAGG GAAACCATTG TCCCTGAAGC
  TTCCTGCTCA TCTCACAAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46597777	NES10446922	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31723271					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46597777	NES10446922	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90908315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16042	CpG island 16042	643 bp distal
Cxcl5	C-X-C motif chemokine ligand 5	within coordinates
Gm72413	predicted gene, 72413	within coordinates
Rr614399	regulatory region 614399	1867 bp distal
Rr614400	regulatory region 614400	1068 bp distal
Tssr47178	transcription start site region 47178	1089 bp downstream