rs31723686 SNP Detail

Summary

• ID
  rs31723686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90908892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATATGTA TATGTATATG
  TATATGTATA TGTATATGTA TATGTATATG TATATGATGT ATATGTATAT GTATATGTGT
  GTGTATATAT ATATATATAT CCTTTGTAAT GTTCATGAGA AGGCAATGCT GTCATACTCT
  CTCTCATAAA ATGGGGACCT CTTTTACTGT TGTTTCTTGG GTGTGTTAAG AGTGTTCTTA
  Y
  GTCTGAGCCT GGGCTGGCAT ATAACTTTTA TGGTTTTAGA AAGCTGCTGT GTCATGCAGA
  AACCTATGTA GAACACAGTT CCTTATTTAG AATTTCTAAA TGTGTAAGTT CTAGAAGGAT
  CAATGTGTTC TCATCTTATA ATTTTAGACA TTTGATGTCT TCGTAGTATG GCATAATGTC
  ATGACTTACT CAACAAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46597782	NES10446827	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31723686					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46597782	NES10446827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90908892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16042	CpG island 16042	1220 bp distal
Cxcl5	C-X-C motif chemokine ligand 5	within coordinates
Gm72413	predicted gene, 72413	within coordinates
Rr614400	regulatory region 614400	1645 bp distal
Tssr47178	transcription start site region 47178	1666 bp downstream