rs31724259 SNP Detail

Summary

• ID
  rs31724259
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127292631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGCGTGT CCTCGTCTCT
  TCCGCTCCCG GCCTGCGGCG TTCGGGCTCA CCCGGGGACC CGCGTGCTTC TAGGCGACCG
  CAGAAGGTCG GCCTTGGCCG CGATCGCCCG TGGAGACCTG CTGCCCGAGC CCACCTACCT
  CTGCGCGAGG TGCCGTGGGG CCATGGTGCG CCGAGTGGGC TGCGGGCTGG GCCGGCGACA
  M
  GCGCTAAGCG ACTGCTGCTG GTGGCGCGGG GAGAAAGAGG AGGGCTTCTT CCTTCGCCGC
  GCGCCGGGAG AGCGATGAGC TCATGGACAG CTCCCAGAAA TATGTCTATA TGCACCACTG
  CCTGCCGGAG CTCGCGAGGT GGGTGGGGAT AAGAAGCTCG GCTGCGCTCC CGCAGCCCGG
  GAGACGTCCC CCGGGAGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45564238	mCV24304141	ABI	CRAMUS_MOUSE	f	SNP		C						A		A
ss61079243	NES16586984	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	C	A	C		C	A	A	A		A	A		A
ss135865104	ENSMUSSNP3738196	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							A
ss320954690	CHEV_3_127201900	CHEVERUD	SCREENING_POP	f	SNP													A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31724259					SNP	C	C	C	A	C	A	C	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079243	NES16586984	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127292631 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	within coordinates
Rr584800	regulatory region 584800	9 bp proximal
Tssr35576	transcription start site region 35576	4 bp downstream
Tssr35577	transcription start site region 35577	67 bp downstream
Tssr35578	transcription start site region 35578	94 bp downstream
Tssr35579	transcription start site region 35579	113 bp downstream