rs31724569 SNP Detail

Summary

• ID
  rs31724569
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89926047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATTAGACA GCTCACAACC ACCTGTAACT CCACTCCAGG
  GATTCTGATG TCTCTGGCTT CTTAGGGTAC CAGCACTCAT ATGCACACAG CCACTACCCC
  M
  ACCAAATAGT TTAAAATAAA ACAATTCTTA GGACCCATCC TGCTAGACAG GTACTTCAGA
  CCATCTTAGG TATATGTTAT CCCTTTTACC AGAGTAACG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45564790	mCV22816731	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss135475473	ENSMUSSNP6509335	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
ss320837368	CHEV_3_89822662	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31724569					SNP	C	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89926047 () rs orientation: forward

Symbol	Name	Function Class
Tssr34182	transcription start site region 34182	1909 bp upstream
Tssr34183	transcription start site region 34183	1127 bp upstream
Tssr34184	transcription start site region 34184	260 bp upstream
Tssr34185	transcription start site region 34185	457 bp downstream
Tssr34186	transcription start site region 34186	492 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	within coordinates