rs31724888 SNP Detail

Summary

• ID
  rs31724888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100141183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCTCACC AGCCCCTTCA CCAATTTTTT AAAAGAGTGG
  TTTATTGGGT GCATTGCGAG TGAGCAATGG GCAGAGTAGA GTACTGTCAG CTTTGTAAGA
  Y
  CACCACCAGC TATGTTGGGA TCACTATCCA CCCACCAGCT ATGGGGTTTT GCCACTTGAT
  AGTGAAGGTT TATTTTATCT AGTCTTGTTT AAAGTAAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47082929	NES11612380	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31724888					SNP	T	T	T	T	T	C	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47082929	NES11612380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100141183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	742 bp proximal
Gm72028	predicted gene, 72028	within coordinates
Rr400469	regulatory region 400469	1173 bp upstream
Rr652131	regulatory region 652131	316 bp proximal
Rr652132	regulatory region 652132	443 bp proximal
Rr652133	regulatory region 652133	1044 bp proximal
Tssr68123	transcription start site region 68123	1343 bp upstream
Tssr68124	transcription start site region 68124	1373 bp upstream
Tssr68125	transcription start site region 68125	1794 bp upstream
Tssr68126	transcription start site region 68126	1853 bp upstream
Tssr68127	transcription start site region 68127	1963 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	1382 bp upstream